Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

[detail level 12]

Cdosage_writer	Handles writing genotype and dosage data to VCF/BCF/SAV files
Cfull_dosages_results	Stores full and leave-one-out (LOO) dosages for imputed variants
▼Cgenetic_map_file	A reader and interpolator for genetic map files
Crecord	A single line entry from the genetic map file
▼Cgetopt_wrapper	A wrapper for parsing command-line options using getopt and getopt_long
Coption_with_desc	Extension of struct option that includes a description string
Chidden_markov_model	Implements a Hidden Markov Model for genotype imputation
Cimputation	Class responsible for managing genotype imputation statistics and timing
Cprog_args	Stores and manages program arguments for Minimac4
▼Crecombination	Provides utilities for handling recombination rates and genetic maps
Cmap_file_line	Representation of a single line from a genetic map file
▼Creduced_haplotypes	Represents a collection of haplotype blocks with reduced storage
Citerator	Iterator for traversing variants within reduced_haplotypes
Creference_site_info	Stores information about a site in the reference dataset
Creference_variant	Extends reference_site_info to include genotype data and allele counts
Csparse_ref_variant	Represents a reference variant with sparse allele information
Ctarget_variant	Represents a variant in the target dataset
Cunique_haplotype_block	Represents a block of unique haplotypes and their variants