Represents a variant in the target dataset. More...

#include <variant.hpp>

Public Attributes
std::string	chrom
	Chromosome name.

std::uint32_t	pos
	1-based position on the chromosome

std::string	id
	Variant identifier.

std::string	ref
	Reference allele.

std::string	alt
	Alternate allele.

bool	in_tar
	True if site exists in the target file.

bool	in_ref
	True if site exists in the reference file.

float	af
	Allele frequency.

float	err
	Error rate.

float	recom
	Recombination rate.

std::vector< std::int8_t >	gt
	Genotype data for each sample.

Detailed Description

Represents a variant in the target dataset.

Contains information about the variant's chromosome, position, alleles, genotype data, and flags indicating whether the site exists in the target or reference file.

Member Data Documentation

◆ af

float target_variant::af

Allele frequency.

◆ alt

std::string target_variant::alt

Alternate allele.

◆ chrom

std::string target_variant::chrom

Chromosome name.

◆ err

float target_variant::err

Error rate.

◆ gt

std::vector<std::int8_t> target_variant::gt

Genotype data for each sample.

◆ id

std::string target_variant::id

Variant identifier.

◆ in_ref

bool target_variant::in_ref

True if site exists in the reference file.

◆ in_tar

bool target_variant::in_tar

True if site exists in the target file.

◆ pos

std::uint32_t target_variant::pos

1-based position on the chromosome

◆ recom

float target_variant::recom

Recombination rate.

◆ ref

std::string target_variant::ref

Reference allele.

The documentation for this struct was generated from the following file:

src/variant.hpp

Public Attributes