reference_site_info Struct Reference

Stores information about a site in the reference dataset. More...

#include <variant.hpp>

Inheritance diagram for reference_site_info:

Public Member Functions
	reference_site_info ()
	reference_site_info (std::string _chrom, std::uint32_t _pos, std::string _id, std::string _ref, std::string _alt, float _err, float _recom, double _cm)

Public Attributes
std::string	chrom
	Chromosome name.
std::uint32_t	pos = 0
	Position on the chromosome.
std::string	id
	Variant identifier.
std::string	ref
	Reference allele.
std::string	alt
	Alternate allele.
float	err = std::numeric_limits<float>::quiet_NaN()
	Error rate.
float	recom = std::numeric_limits<float>::quiet_NaN()
	Recombination rate.
double	cm = std::numeric_limits<double>::quiet_NaN()
	Centimorgan position.

Detailed Description

Stores information about a site in the reference dataset.

Includes basic variant information as well as error and recombination rates, and centimorgan position if available.

Constructor & Destructor Documentation

reference_site_info() [1/2]

reference_site_info::reference_site_info ( )

inline

Here is the caller graph for this function:

reference_site_info() [2/2]

reference_site_info::reference_site_info ( std::string _chrom, std::uint32_t _pos, std::string _id, std::string _ref, std::string _alt, float _err, float _recom, double _cm )

inline

Member Data Documentation

alt

std::string reference_site_info::alt

Alternate allele.

chrom

std::string reference_site_info::chrom

Chromosome name.

cm

double reference_site_info::cm = std::numeric_limits<double>::quiet_NaN()

Centimorgan position.

err

float reference_site_info::err = std::numeric_limits<float>::quiet_NaN()

Error rate.

id

std::string reference_site_info::id

Variant identifier.

pos

std::uint32_t reference_site_info::pos = 0

Position on the chromosome.

recom

float reference_site_info::recom = std::numeric_limits<float>::quiet_NaN()

Recombination rate.

ref

std::string reference_site_info::ref

Reference allele.

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The documentation for this struct was generated from the following file:

• src/variant.hpp