Here is a list of all file members with links to the files they belong to:

• check_ploidies() : input_prep.cpp
• compress_reference_panel() : input_prep.cpp, input_prep.hpp
• convert_old_m3vcf() : input_prep.cpp, input_prep.hpp
• generate_reverse_maps() : input_prep.cpp, input_prep.hpp
• init_ploidies() : input_prep.cpp
• load_reference_haplotypes() : input_prep.cpp, input_prep.hpp
• load_reference_haplotypes_old_recom_approach() : input_prep.cpp, input_prep.hpp
• load_target_haplotypes() : input_prep.cpp, input_prep.hpp
• load_variant_hmm_params() : input_prep.cpp, input_prep.hpp
• main() : main.cpp
• operator!=() : unique_haplotype.hpp
• operator==() : unique_haplotype.hpp
• separate_target_only_variants() : input_prep.cpp, input_prep.hpp
• sites_match() : hidden_markov_model.cpp
• stat_ref_panel() : input_prep.cpp, input_prep.hpp
• stat_tar_panel() : input_prep.cpp, input_prep.hpp