unique_haplotype.hpp File Reference

#include "variant.hpp"
#include "recombination.hpp"
#include <savvy/reader.hpp>
#include <savvy/writer.hpp>
#include <cstdint>
#include <string>
#include <vector>
#include <deque>
#include <limits>
#include <cassert>

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Classes
class	unique_haplotype_block
	Represents a block of unique haplotypes and their variants. More...
class	reduced_haplotypes
	Represents a collection of haplotype blocks with reduced storage. More...
class	reduced_haplotypes::iterator
	Iterator for traversing variants within reduced_haplotypes. More...

Functions
bool	operator== (const reduced_haplotypes::iterator &lhs, const reduced_haplotypes::iterator &rhs)
	Compares two iterators for equality.
bool	operator!= (const reduced_haplotypes::iterator &lhs, const reduced_haplotypes::iterator &rhs)
	Compares two iterators for inequality.

Function Documentation

operator!=()

bool operator!= ( const reduced_haplotypes::iterator & lhs, const reduced_haplotypes::iterator & rhs )

inline

Compares two iterators for inequality.

This is the negation of operator==.

Parameters

lhs	Left-hand side iterator.
rhs	Right-hand side iterator.

Returns

True if iterators are not equal, false otherwise.

operator==()

bool operator== ( const reduced_haplotypes::iterator & lhs, const reduced_haplotypes::iterator & rhs )

inline

Compares two iterators for equality.

Two iterators are considered equal if they refer to the same block index and the same local index within that block.

Parameters

lhs	Left-hand side iterator.
rhs	Right-hand side iterator.

Returns

True if iterators are equal, false otherwise.

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