This is the complete list of members for prog_args, including all inherited members.

all_typed_sites() const	prog_args	inline
chunk_size() const	prog_args	inline
compress_reference() const	prog_args	inline
decay() const	prog_args	inline
diff_threshold() const	prog_args	inline
emp_out_path() const	prog_args	inline
error_param() const	prog_args	inline
fail_min_ratio() const	prog_args	inline
fmt_fields() const	prog_args	inline
getopt_wrapper(std::string usage_str, std::vector< option_with_desc > long_opts)	getopt_wrapper	inline
help_is_set() const	prog_args	inline
long_options_	getopt_wrapper	protected
map_path() const	prog_args	inline
max_block_size() const	prog_args	inline
max_long_opt_length_	getopt_wrapper	protected
min_block_size() const	prog_args	inline
min_r2() const	prog_args	inline
min_ratio() const	prog_args	inline
min_recom() const	prog_args	inline
opts_	getopt_wrapper	protected
out_compression() const	prog_args	inline
out_format() const	prog_args	inline
out_path() const	prog_args	inline
overlap() const	prog_args	inline
parse(int argc, char **argv)	prog_args	inline
pass_only() const	prog_args	inline
print_usage(std::ostream &os)	getopt_wrapper	inline
prob_threshold() const	prog_args	inline
prob_threshold_s1() const	prog_args	inline
prog_args()	prog_args	inline
ref_path() const	prog_args	inline
region() const	prog_args	inline
sample_ids() const	prog_args	inline
short_opt_string_	getopt_wrapper	protected
sites_out_path() const	prog_args	inline
slope_unit() const	prog_args	inline
tar_path() const	prog_args	inline
temp_buffer() const	prog_args	inline
temp_prefix() const	prog_args	inline
threads() const	prog_args	inline
update_m3vcf() const	prog_args	inline
usage_str_	getopt_wrapper	protected
version_is_set() const	prog_args	inline